EDIT - I may have found an easy-ish fix for it. Just gotta test it out
And also, I know it's a bit of an ask, but if you happen to come across any items that are hard to pick up, if you could take a screenshot of it and post it here so I can see it, I'll try and fix as many as I can. I fixed the terminal and Nuka Quantum I mentioned earlier that's near the office key. The annoying thing is colliders behave differently in the POI editor than they do in game. So in the editor, this whole issue doesn't exist.